Welcome

The spectra-cluster toolsuite provides tools to facilitate the usage of spectrum clustering for MS/MS based proteomics data analysis.

It is centered around our spectra-cluster algorithm which is used to build the PRIDE Cluster resource (Griss et al., Nat. Methods 2016) and can process up to 100+ million MS/MS spectra.

Getting started

The simplest way to use the spectra-cluster algorithm is through our newly released Proteome Discoverer Node.

For a step-by-step instruction have a look at our Proteome Discoverer Tutorial.

Hint

To get help simply post a question at http://qa.proteomics-academy.org

Content

• Welcome
• Clustering tools / software
  • Developing own algorithms
• Proteome Discoverer Tutorial
  • Free version of Proteome Discoverer
  • Installing free nodes
  • Installing the spectra-cluster node
  • Using the spectra-cluster node
  • Clustering settings
  • Clustering results
• How to cluster MS/MS data
  • Preparing your data
  • Searching your data
  • Merging identification data
  • Running the clustering
• Analysing proteomics samples using spectrum clustering
  • Exporting data from Proteome Discoverer results
  • Processing .clustering results
• Analysing clustering results