####### Welcome ####### The spectra-cluster toolsuite provides tools to facilitate the usage of spectrum clustering for MS/MS based proteomics data analysis. It is centered around our spectra-cluster algorithm which is used to build the `PRIDE Cluster`_ resource (`Griss et al., Nat. Methods 2016`_) and can process up to 100+ million MS/MS spectra. .. _PRIDE Cluster: https://www.ebi.ac.uk/pride/cluster .. _Griss et al., Nat. Methods 2016: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968634/ Getting started =============== The simplest way to use the spectra-cluster algorithm is through our newly released `Proteome Discoverer Node`_. For a step-by-step instruction have a look at our :doc:`/tutorials/proteome_discoverer`. .. _Proteome Discoverer Node: http://ms.imp.ac.at/?goto=spectra-cluster .. hint:: To get help simply post a question at http://qa.proteomics-academy.org Content ======= .. toctree:: :maxdepth: 2 self tools tutorials/proteome_discoverer tutorials/clustering_basics tutorials/unidentified_analysis analysis_results .. * :ref:`genindex` .. * :ref:`modindex` .. * :ref:`search`